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Roasted Poblano Chiles Stuffed with Cheesy Butternut Squash Quinoa + Pepita Crema

A lightened up chile relleno, this recipe begins with roasted poblano peppers stuffed with cheesy quinoa, caramelized onions and butternut squash, and ends with a creamy pumpkin seed sauce kissed with lime and cumin.
Prep: 20 minutes
Cook: 50 minutes
Total: 1 hour 10 minutes
Servings: 6 medium sized servings
Author: The Bojon Gourmet


For the quinoa:

  • 1/2 cup quinoa (white or multi), soaked 1 hour in cool water, rinsed well, and drained
  • 3/4 cup water
  • 1/4 teaspoon fine sea salt

For the peppers and stuffing:

  • 6 medium-sized, meaty poblano chiles , (or other sweet or mildly spicy peppers, such as bell or Anaheim/Hatch)
  • 1 medium yellow onion, peeled, halved, and diced
  • 1 tablespoon olive oil
  • 1/2 teaspoon fine sea salt
  • 3 cups peeled, cubed butternut squash
  • 1/4 cup water
  • 1 cup crumbled fresh goat cheese, (4 ounces / 115 grams)
  • 1 cup grated dry jack cheese (or other tasty melting cheese such as sharp cheddar), (3 ounces / 85 grams)
  • cilantro leaves, extra goat cheese and pepitas, lime wedges, and avocado slices for garnish (optional)

For the pepita crema:

  • 1 cup pepitas, raw or lightly toasted, soaked 4-12 hours in cool water and drained
  • 1 1/4 teaspoons cumin seeds
  • juice of 1-2 limes
  • 1/2 teaspoon fine sea salt
  • 1 large garlic clove
  • 1 1/4 cups water


Cook the quinoa:

  • In a medium saucepan, combine the soaked and drained quinoa, water, and salt. Bring to a boil, then immediately decrease the heat to very low, cover, and let steam until all the water is absorbed, 10-15 minutes. Let stand 5 minutes, then fluff with a fork. The quinoa should be cooked through but still a little bit firm. If it is too crunchy, sprinkle in a few more tablespoons of water and continue cooking.

Prepare the peppers:

  • Preheat the broiler. Place the whole peppers on a baking sheet and broil on each side until the skin is blackened and blistered in places, a few minutes per side. Ideally, the pepper is softened, but firm enough to hold its shape. The roasting process will take about 10 minutes in total.
  • Remove the peppers from the broiler and let them cool completely. When cool, gently peel away as much skin as will come off easily. Cut a slit down the center of each pepper, leaving them connected at the top and bottom. Working carefully in order to keep the pepper in one piece, remove the seeds and ribs; I found my fingers worked best, but do wash your hands and under your nails thoroughly with soap afterwards to remove the oils which can burn your skin (or wear gloves as you work).

Make the filling:

  • Heat the oil in a wide skillet over a medium flame until it shimmers. Add the onions and salt and cook, stirring frequently, until the onion is tender and beginning to color. Add the squash and water, cover, and simmer until the squash is tender but still holding its shape, about 10 minutes.
  • Let the squash mixture cool slightly, then place it in a large bowl with the quinoa. Add the cheeses and fold gently to combine.

Stuff and bake the peppers:

  • Preheat the oven to 350ºF.
  • Carefully stuff the filling into the peppers, filling them all the way and pressing them back into shape if need be. Place the peppers in a baking dish and bake until heated through, 20 minutes.

Make the pepita crema:

  • Toast the cumin seeds in a small, dry skillet over a medium flame, shaking frequently, until they smell nutty, 1-2 minutes. In the bowl of a blender, combine the soaked and drained pepitas, toasted cumin seeds, juice of 1 lime, salt, garlic, and half of the water. Blend to a paste, slowly adding the rest of the water to make a thick sauce. Blend on high until very smooth, 3-5 minutes. Taste, adding more salt or lime if you feel it needs it. The crema will keep refrigerated for up to 1 week.

Serve the peppers:

  • Place each pepper on a plate in a puddle of crema. Drizzle a little extra crema over the peppers and garnish with goat cheese, cilantro, and pepitas if you like, adding avocado slices and lime wedges to the plates. Extra peppers can be made ahead and refrigerated until ready to serve for up to a few days.


Inspired by Marinita's chile relleno.
Be sure to soak the pepitas for at least 4 hours (and up to 12) to ensure a creamy sauce. I like to soak my quinoa for an hour, ousting bitterness and shortening the cooking time; alternatively, soak it for 5 minutes, rinse it well, and add a little more water when you cook it.
Poblanos can vary greatly in spiciness depending on their growing conditions. If you're sensitive to spice like me, cross your fingers for mild ones, or make this with sweet bell peppers. Anaheim / Hatch / New Mexican green chiles are similar to poblanos in that they can range from mild to fairly hot, and can also stand in here.
For the squash, I like to use the neck of a large butternut as its straight shape makes it easy to peel with a T-shaped vegetable peeler. Save the base to roast separately for another use.
These chiles can be made and stuffed ahead of time, then popped in the oven when ready to heat and serve. I think you could make these vegan by simply omitting the cheese and doubling the other filling ingredients.
Nutritional values are based on one of six servings.


Calories: 369kcal | Carbohydrates: 27g | Protein: 19g | Fat: 22g | Saturated Fat: 11g | Cholesterol: 34mg | Sodium: 739mg | Potassium: 689mg | Fiber: 5g | Sugar: 6g | Vitamin A: 8415IU | Vitamin C: 114.3mg | Calcium: 259mg | Iron: 3.7mg
Making this? I'd love to see!Tag your snaps @The_Bojon_Gourmet and #bojongourmet!